PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01579.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family WRKY
Protein Properties Length: 530aa    MW: 58384.1 Da    PI: 6.9832
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01579.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30302360259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Migut.H01579.1.p 302 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILTTTYEGNHNHP 360
                       7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-33286362IPR003657WRKY domain
SuperFamilySSF1182901.7E-27294362IPR003657WRKY domain
PROSITE profilePS5081129.092296362IPR003657WRKY domain
SMARTSM007744.1E-36301361IPR003657WRKY domain
PfamPF031062.8E-26303360IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MDKGWCLTLE NSDQSRFFCN NKSNFGLFST STSSPTLINN NNHRNNYGST LNMFPVMNSS  60
GGDEHHPPPP VAAAVRGEVD FFSDKKMPFD NDRQVHNNTL VKKEIHSFAQ VNTGLQLLTA  120
NTGSDQSTVD DGVSSGVEDM RAKIELGQLQ VELERMNGEN QRLRGMLTQV STNYTSLQMH  180
LVTMMQKQQN PTTQLNHDQQ QIVVREHEIK KHEDGGLLVP RQFFDLSNRI LSDERSDSSS  240
EERTISIAES PNRIDREDQN REYSPNKAPK LDHAKPVEQS TEATMRKARV SVRARSEAPM  300
ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILT TTYEGNHNHP  360
LPPAAMAMAA TTSSAANMLL SGSMSSADGF MNPNFLTRTI LPCSSNVATI SASAPFPTIT  420
LDLTQSPNPL QFQRPGPQFQ IPFAIPNNPN PNPNMLIPQD MYNQSKFSGL HMPQTTSYAD  480
TVSAITADPN FTAALAAAIS SIIGGNQAQD NGNANPNLNN TTDGNNKNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22288364176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841979.10.0PREDICTED: WRKY transcription factor 6
SwissprotQ9C5191e-142WRKY6_ARATH; WRKY transcription factor 6
TrEMBLA0A022R1Q10.0A0A022R1Q1_ERYGU; Uncharacterized protein
STRINGVIT_10s0116g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-111WRKY family protein